THE ASCIDIA STYELA PLICATA AS A NATURAL EUTROPHICATION CONTROL. PRELIMINARY RESULTS OF AN EXPERIMENTAL APPROACH

Abstract The potential of the solitary ascidia Styela plicata as a natural eutrophication control was investigated at the inner Thermaikos Gulf. Experimental work was carried out in the laboratory to estimate filtration efficiency, and in the field to study the colonization potential. S. plicata specimens halved the original concentration of particulate organic matter in about 2 hours, and successfully colonized a variety of artificial substrates within 3 months. These results support the abilities of this species as biological filter

Overview of the conservation status of Mediterranean anthozoans

The IUCN Red List of Threatened SpeciesTM – Regional AssessmentThis report presents the conservation status of the anthozoans occurring in the Mediterranean Sea, based on the assessment of 136 species using the IUCN Red List methodology. It identifies those species that are threatened with extinction at the regional level to guide appropriate conservation actions in order to improve their statusVersión del edito

ClimateFish: A Collaborative Database to Track the Abundance of Selected Coastal Fish Species as Candidate Indicators of Climate Change in the Mediterranean Sea

Under the effects of global warming, many animals and plants are undergoing rapid distribution shifts. These changes can be particularly rapid in marine fishes, and many species have responded markedly to recent increases in sea temperature. ClimateFish is an open-access database, which collates abundance data for 7 Mediterranean indigenous and 8 non-indigenous fishes, proposed as candidate indicators of climate change. These species have been selected by a network of Mediterranean scientists based on their wide distribution, responsiveness to temperature conditions and easy identification. Data are periodically collected according to a standard visual census protocol in four different depth layers. At present, the database collates data on a total number of 101'771 observed individuals belonging to the 15 target species. Counts were realized along 3142 transects carried out in 7 Mediterranean countries between 2009 and 2021. This database, associated with climate data, offers new opportunities to investigate spatiotemporal effects of climate change and to test the effectiveness of each selected indicator. Data are available at https://doi.org/10.17882/86784.The Mediterranean ClimateFish initiative was initially conceived by the international basin wide monitoring program CIESM Tropical Signals (funded by the Albert II of Monaco Foundation) and subsequently supported by the Interreg Med Programme (Projects: MPA-ADAPT, grant number 1MED15_3.2_M2_337 and MPA Engage, grant number 5MED18_3.2_M23_007), 85% co funded by the European Regional Development Fund

Learning biophysically-motivated parameters for alpha helix prediction

<p>Abstract</p> <p>Background</p> <p>Our goal is to develop a state-of-the-art protein secondary structure predictor, with an intuitive and biophysically-motivated energy model. We treat structure prediction as an optimization problem, using parameterizable cost functions representing biological "pseudo-energies". Machine learning methods are applied to estimate the values of the parameters to correctly predict known protein structures.</p> <p>Results</p> <p>Focusing on the prediction of alpha helices in proteins, we show that a model with 302 parameters can achieve a Q_{<it>α </it>}value of 77.6% and an SOV_{<it>α </it>}value of 73.4%. Such performance numbers are among the best for techniques that do not rely on external databases (such as multiple sequence alignments). Further, it is easier to extract biological significance from a model with so few parameters.</p> <p>Conclusion</p> <p>The method presented shows promise for the prediction of protein secondary structure. Biophysically-motivated elementary free-energies can be learned using SVM techniques to construct an energy cost function whose predictive performance rivals state-of-the-art. This method is general and can be extended beyond the all-alpha case described here.</p

Holothurian Fisheries in the Hellenic Seas: Seeking for Sustainability

In Mediterranean, the exploitation and exportation of holothurians as food is increasing during the last 25 years, with Turkey and Greece as leading countries. In Greece, the fishery is expanding by the development of two métiers; however, official monitoring is missing, creating concerns on the future viability of the industry. To evaluate the status and future perspectives of holothurian fisheries, an extensive field survey has been completed (May 2019–July 2021) covering 162 sites dispersed in the Hellenic Seas. Field data included the assessment of the abundance of holothurians (via 100 m transect replicates), and catch per unit of effort (CNPUE and CBPUE, based on 10-min commercial fishing practices). H. tubulosa, H. poli, H. mammata and H. sanctori were fished in 41.35% of the surveyed stations. H. poli (CNPUE 168 specimens, CBPUE 22.24 kg) and H. tubulosa (CNPUE 127 specimens, CBPUE14.51 kg) were the most common species, forming locally dense populations. Mean annual catch was 275 metric tons (2016–2021) according to the processing of the units’ data; 62% of the production was made by H. tubulosa and 38% by H. poli. Our results suggest the existence of exploitable grounds in the north Aegean, the central Cyclades, and the north Dodecanese, according to the prevalent environmental conditions (organic load) and fishing pressure

Population Density, Size Structure, and Reproductive Cycle of the Comestible Sea Urchin Sphaerechinus granularis (Echinodermata: Echinoidea) in the Pagasitikos Gulf (Aegean Sea)

Sphaerechinus granularis is a common grazer that lives in various sublittoral habitats, displaying typical covering behavior; i.e., putts shell-fragments, pebbles, and algae on its test. It is an edible species of increasing commercial importance due to the depletion of the common urchin&rsquo;s, Paracentrotus lividus, stocks. Its biology, however, is not adequately studied over its distributional range. The present study examines population density, size structure, and reproductive biology of S. granularis in the Aegean Sea. Samplings were made with SCUBA-diving (8&ndash;10 m) and included: (i) visual census along transects to estimate density, and (ii) random collection of specimens at monthly intervals to assess biometry and gametogenesis. Population density had moderate values that almost doubled when inputted to Distance software. S. granularis had larger dimensions in the sheltered site; size-structures were unimodal (65&ndash;70 mm and 70&ndash;75 mm, in exposed and sheltered site, respectively). An annual reproductive cycle was evident, according to GSI and gonads&rsquo; histology, with a clear spawning peak in early spring. This pattern conforms to previous reports from the Atlantic, but precedes those from the Mediterranean (reproduction in summer). The provided baseline knowledge on the biology of S. granularis is important for the viable management of its developing fishery

Symbiosis of sea anemones and hermit crabs: different resource utilization patterns in the Aegean Sea

The small-scale distribution and resource utilization patterns of hermit crabs living in symbiosis with sea anemones were investigated in the Aegean Sea. Four hermit crab species, occupying shells of nine gastropod species, were found in symbiosis with the sea anemone Calliactis parasitica. Shell resource utilization patterns varied among hermit crabs, with Dardanus species utilizing a wide variety of shells. The size structure of hermit crab populations also affected shell resource utilization, with small-sized individuals inhabiting a larger variety of shells. Sea anemone utilization patterns varied both among hermit crab species and among residence shells, with larger crabs and shells hosting an increased abundance and biomass of C. parasitica. The examined biometric relationships suggested that small-sized crabs carry, proportionally to their weight, heavier shells and increased anemone biomass than larger ones. Exceptions to the above patterns are related either to local resource availability or to other environmental factors

Mass Mortality of Shallow-Water Temperate Corals in Marine Protected Areas of the North Aegean Sea (Eastern Mediterranean)

Coral mortality is a global phenomenon of increasing magnitude, correlated with climate change. Prolonged marine heatwaves have particularly affected the north Aegean Sea in summer 2021, threatening shallow-water stony corals, such as Balanophyllia europaea and Cladocora caespitosa. To assess their population status, ten coastal, rocky-bottom stations dispersed in Natura 2000 sites of Chalkidiki (north Aegean) were surveyed using non-destructive techniques in autumn 2021. At each station, corals’ abundance was estimated in situ, by counting the number of B. europaea polyps within randomly placed 50 × 50 cm quadrats, and the number of C. caespitosa colonies along three replicate belt transects 1 × 10 m. The status of corals was qualitatively assigned as healthy, bleached (partially or complete), or in necrosis (partial or complete). B. europaea was found in 80% of stations; in total, 58.17% of the coral specimens were affected by necrosis. C. caespitosa was found in 30% of stations; in total, 27.49% of the coral colonies were partially bleached and 11.32% in necrosis. Another nine sessile invertebrates (sponges, bivalves, and ascidians) were observed in necrosis. These results highlight the need to establish monitoring programs on vulnerable sessile invertebrate populations along the Aegean Sea to assess climate change impacts